From 32ac537c3e526150267ed2bf0e6382e03378a3a1 Mon Sep 17 00:00:00 2001
From: Alexandru Gherghescu <gherghescu_alex1@yahoo.ro>
Date: Tue, 2 Jul 2024 00:11:50 +0300
Subject: [PATCH] WIP training checkpointing
---
optimus/trainer.py | 133 +++++++++++++++++++++++++++---
optimus/utils/checkpoint_utils.py | 84 +++++++++++++++++++
training.py | 35 +++++---
3 files changed, 228 insertions(+), 24 deletions(-)
create mode 100644 optimus/utils/checkpoint_utils.py
diff --git a/optimus/trainer.py b/optimus/trainer.py
index 00497ab..e592516 100644
--- a/optimus/trainer.py
+++ b/optimus/trainer.py
@@ -1,3 +1,5 @@
+import os
+import json
import logging
from pathlib import Path
from typing import Optional
@@ -8,7 +10,7 @@ import torch.nn as nn
from torch.utils.data import DataLoader
from transformers.tokenization_utils_base import PreTrainedTokenizerBase
-from optimus.utils import dist_utils, logging_utils
+from optimus.utils import dist_utils, logging_utils, checkpoint_utils
logger = logging.getLogger(__name__)
@@ -81,6 +83,47 @@ class TrainingArguments():
self.save_limit = save_limit
+class TrainerState():
+ """
+ State of a trainer. This contains information that needs to be persisted
+ across checkpoints, such as current epoch or current number of steps.
+ """
+ def __init__(self):
+ self.current_epoch = 0
+
+ # this is weight updates, in total, over the whole training loop, with
+ # however many epochs; with gradient accumulation steps > 1, there
+ # will be more forward passes, but this is not captured here; global
+ # steps doesn't care about epochs, but is rather equal to epochs *
+ # steps_per_epoch
+ self.global_steps = 0
+
+ def to_json_file(self, file: Path):
+ """
+ Save the current trainer state as a json file.
+
+ Args:
+ file (Path): Path where the trainer state json file should be saved.
+ """
+ print('saving json trainer state')
+ with open(file, 'w', encoding='utf-8') as f:
+ json.dump(vars(self), f, ensure_ascii=False, indent=4)
+ # TODO probably should just be to_json
+
+ @classmethod
+ def from_json_file(cls, file: Path | str):
+ """
+ Reload the state of a trainer from a json file. Note: It is very likely
+ that training *will not work as expected* if you resume training from a
+ checkpoint with a trainer state that has been manually altered.
+
+ Args:
+ file (Path): Path to a json file (usually contained inside a
+ checkpoint directory),
+ """
+ print('loading trainer state from json') #TODO
+
+
class Trainer():
"""
Generic PyTorch trainer implementation.
@@ -112,13 +155,24 @@ class Trainer():
self.eval_dataloader = eval_dataloader
self.tokenizer = tokenizer
+ # initialize an empty trainer state (if resuming from a checkpoint,
+ # will be updated later)
+ self.state = TrainerState()
+
if self.args.log_on_main_rank_only:
logger.addFilter(logging_utils.FilterMainRankOnly())
- def train(self) -> None:
+ def train(self, resume_from_checkpoint: bool|Path = False) -> None:
"""
Training loop of the trainer.
+ Args:
+ resume_from_checkpoint (bool or Path): Whether training should
+ resume from a checkpoint or start from scratch. If yes, then
+ training resumes from the checkpoint with the latest
+ modification time saved in `checkpoints_dir` (see
+ `TrainingArguments`).
+
"""
num_examples = len(self.train_dataloader) * self.args.per_device_batch_size
num_update_steps_per_epoch = len(self.train_dataloader) // self.args.gradient_accumulation_steps
@@ -134,6 +188,44 @@ class Trainer():
# scaler used for mixed precision fp16 training on GPU
self.scaler = torch.cuda.amp.GradScaler(enabled=self.args.use_fp16)
+ # initialize a Trainer state (will be overriden later if resuming from
+ # checkpoint)
+ self.state = TrainerState()
+
+ epochs_trained = 0
+ steps_trained_in_current_epoch = 0
+
+ # potentially resume from saved checkpoint
+ if isinstance(resume_from_checkpoint, bool) and resume_from_checkpoint:
+ last_checkpoint: Path | None = checkpoint_utils.get_last_checkpoint_dir(self.args.checkpoints_dir)
+ if last_checkpoint is not None:
+ logger.info(f"Resuming training from checkpoint {str(last_checkpoint)}")
+
+ # TODO check what model.state_dict, opt.state_dict etc. really is,
+ # and see how to replicate for trainer state
+ # TODO possibly move trainer state and trainer args to a separate
+ # trainer utils, since state should most likely be held separate
+ # from behaviour (Trainer) anyway, and also because TrainerState and
+ # checkpoint_utils have a circular dependency
+ self.state = TrainerState.from_json_file(os.path.join('checkpoint-1500', 'trainer_state.json'))
+
+ # load model from .pt
+ self.model.load_state_dict(torch.load(os.path.join('checkpoint-1500', 'model.pt')))
+
+ #trainer_state.to_json_file(os.path.join('checkpoint-1500', 'trainer_state.json'))
+ # TODO write this function and check it
+ # TODO also write cu.save_checkpoint()
+ # checkpoint_utils.load_from_checkpoint(
+ # last_checkpoint,
+ # self.state,
+ # self.model,
+ # self.optimizer,
+ # self.scheduler,
+ # #self.scaler, # ?
+ # )
+
+ self.model.train()
+
logger.info("***** Running training *****")
logger.info(f" Num examples = {num_examples:,}")
logger.info(f" Num epochs = {self.args.num_train_epochs:,}")
@@ -142,17 +234,24 @@ class Trainer():
logger.info(f" Global batch size (w. distributed & accumulation) = {global_batch_size:,}")
logger.info(f" Total optimization steps = {max_steps:,}")
- self.model.train()
-
- # start training for num_train_epochs
- for epoch in range(self.args.num_train_epochs):
+ # start training for num_train_epochs (or less if resumed from checkpoint)
+ for epoch in range(self.state.current_epoch, self.args.num_train_epochs):
# needed for distributed sampler RNG state
if hasattr(self.train_dataloader, "set_epoch"):
self.train_dataloader.set_epoch(epoch)
+ # resume from checkpoint, update learning rate
+ for step in range(0, self.state.global_steps):
+ self.args.lr_scheduler.step()
+
for step, inputs in enumerate(self.train_dataloader):
+ # check if resume from checkpoint and skip the first batches of
+ # data in the dataloader
+ if steps_trained_in_current_epoch < (self.state.global_steps % (self.state.current_epoch + 1)):
+ continue
+
inputs = inputs['input_ids']
inputs = inputs.to(self.args.device)
@@ -164,7 +263,7 @@ class Trainer():
logits = logits[..., :-1, :].contiguous().view(
-1,
self.model.module.vocab_size
- if dist_utils.is_dist_available_and_initialized()
+ if dist_utils.is_dist_available_and_initialized() # TODO this should probably be a hasattr(self.model, 'module')
else self.model.vocab_size
)
@@ -177,9 +276,11 @@ class Trainer():
# update only after gradient_accumulation_steps
if (step + 1) % self.args.gradient_accumulation_steps == 0:
- # Note: This will ignore the last few batches of the dataset,
- # when the gradient accumulation steps are more than 1, and the
- # number of batches doesn't cleanly divide by grad_acc_steps
+ # Note: This will ignore the last few batches of the dataset
+ # when grad_acc_steps > 1 and the number of batches isn't
+ # divisible by grad_acc_steps
+
+ steps_trained_in_current_epoch += 1
# gradient clipping
self.scaler.unscale_(self.args.optimizer)
@@ -193,11 +294,21 @@ class Trainer():
self.args.lr_scheduler.step()
# lr = self.args.lr_scheduler.get_last_lr()[0]
- if (step + 1) % self.args.log_steps * self.args.gradient_accumulation_steps == 0:
+ if steps_trained_in_current_epoch % self.args.log_steps == 0:
logger.info(f"Loss is {tr_loss:,}")
self.progress.update(1)
+ if steps_trained_in_current_epoch % self.args.save_steps == 0:
+ if dist_utils.get_rank() == 0: # TODO this only works for DDP
+ # save checkpoint
+ print(f'saving checkpoint at step {steps_trained_in_current_epoch}')
+ os.makedirs(os.path.join(self.args.checkpoints_dir, f'checkpoint-{self.state.global_steps}'))
+ self.state.to_json_file(os.path.join(self.args.checkpoints_dir, os.path.join(f'checkpoint-{self.state.global_steps}', 'trainer_state.json')))
+ torch.save(self.model.state_dict(),
+ os.path.join(self.args.checkpoints_dir,
+ os.path.join(f'checkpoint-{self.state.global_steps}', 'model.pt')))
+
def save_model(self, save_dir: Path) -> None:
"""
Save model and tokenizer to a directory.
diff --git a/optimus/utils/checkpoint_utils.py b/optimus/utils/checkpoint_utils.py
new file mode 100644
index 0000000..bee6b83
--- /dev/null
+++ b/optimus/utils/checkpoint_utils.py
@@ -0,0 +1,84 @@
+import os
+import re
+import logging
+from pathlib import Path
+
+from optimus.trainer import TrainerState
+
+
+logger = logging.getLogger(__name__)
+
+
+# files used for checkpointing
+TRAINING_ARGS_NAME = "training_args.bin"
+TRAINER_STATE_NAME = "trainer_state.json"
+OPTIMIZER_NAME = "optimizer.pt"
+OPTIMIZER_NAME_BIN = "optimizer.bin"
+SCHEDULER_NAME = "scheduler.pt"
+SCALER_NAME = "scaler.pt"
+# FSDP_MODEL_NAME = "pytorch_model_fsdp"
+
+
+def get_last_checkpoint_dir(dir: Path) -> Path | None:
+ """
+ Get last saved (highest global step) checkpoint in a directory, matching the
+ pattern `checkpoint-<number>`, where number is the global step of training.
+ Each checkpoint should be in itself another directory.
+
+ Args:
+ dir (Path): The checkpoints directory.
+
+ Returns (Path or None): Returns the path to the last checkpoint, or `None`
+ if no valid checkpoints were found.
+
+ """
+ checkpoint_regex = re.compile(r"^checkpoint-(\d+)$")
+ checkpoints_dirs = os.listdir(dir)
+ checkpoints = [
+ path
+ for path in checkpoints_dirs
+ if checkpoint_regex.search(path) is not None and os.path.isdir(os.path.join(dir, path))
+ ]
+ if len(checkpoints) == 0:
+ return None
+ return Path(os.path.join(
+ dir,
+ max(checkpoints,
+ key=lambda x: int(checkpoint_regex.search(x).groups()[0]))
+ ))
+
+
+def load_from_checkpoint(
+ chkpt: Path,
+ trainer_state: TrainerState,
+ # model: nn.Module,
+ # optimizer: torch.optim.Optimizer,
+ # scheduler: torch.optim.lr_scheduler.LRScheduler,
+ ):
+ """
+ Load the TODO from an existing checkpoint. This ensures training can
+ resume exactly as it was before checkpointing.
+
+ Args:
+ chkpt (Path): Path to checkpoint directory.
+ trainer_state (TrainerState): Trainer state to load.
+ """
+ trainer_state = TrainerState.from_json_file(os.path.join(chkpt, TRAINER_STATE_NAME))
+ pass
+
+
+def save_checkpoint(
+ chkpt: Path,
+ trainer_state: TrainerState,
+ ):
+ """
+ Save TODO states as a checkpoint. This ensures training can be resumed
+ exactly as it was before saving.
+
+ Args:
+ chkpt (Path): Path to checkpoint directory.
+ trainer_state (TrainerState): Trainer state to save.
+ """
+ pass
+ # chkpt.mkdir(parents=True, exist_ok=True)
+ # trainer_state.to_json_file()
diff --git a/training.py b/training.py
index 9a6feea..4f0932f 100644
--- a/training.py
+++ b/training.py
@@ -29,6 +29,9 @@ def main(
seed: int = 42,
log_on_main_rank_only: bool = True,
+ # checkpointing
+ resume_from_checkpoint: bool | Path = False,
+
# model + tokenizer
model_config_path: Path = Path('config.json'),
hf_tokenizer_name: str = 'gpt2',
@@ -37,6 +40,9 @@ def main(
# directory than the source code)
data_dir: Path = Path('.'),
+ # TODO make a different scratch_dir for checkpoints, instead of re-using
+ # data_dir; similarly think about save_dir and logs_dir
+
# dataset dir (appended to data_dir)
dataset_dir: Path = Path('gpt2_tokenized_wikitext103_no_seq_len'),
@@ -68,6 +74,8 @@ def main(
have its initial PyTorch seed set to `seed + process_rank`.
log_on_main_rank_only (bool): Whether output should only be printed by
the main rank (rank 0).
+ resume_from_checkpoint (bool|Path): Yes or a valid checkpoint path to
+ resume training from an existing checkpint.
model_config_path (Path): Path to a config file which describes the
model to be trained.
hf_tokenizer_name (str): HuggingFace tokenizer name.
@@ -117,20 +125,20 @@ def main(
else:
dataset_dir = data_dir / dataset_dir
- if isinstance(checkpoints_dir, str):
- checkpoints_dir = data_dir / Path(checkpoints_dir)
- else:
- checkpoints_dir = data_dir / checkpoints_dir
+ #if isinstance(checkpoints_dir, str):
+ # checkpoints_dir = data_dir / Path(checkpoints_dir)
+ #else:
+ # checkpoints_dir = data_dir / checkpoints_dir
- if isinstance(log_dir, str):
- log_dir = data_dir / Path(log_dir)
- else:
- log_dir = data_dir / log_dir
+ #if isinstance(log_dir, str):
+ # log_dir = data_dir / Path(log_dir)
+ #else:
+ # log_dir = data_dir / log_dir
- if isinstance(save_dir, str):
- save_dir = data_dir / Path(save_dir)
- else:
- save_dir = data_dir / save_dir
+ #if isinstance(save_dir, str):
+ # save_dir = data_dir / Path(save_dir)
+ #else:
+ # save_dir = data_dir / save_dir
logger.info(f"Running with:\n"
f"\t- batch size: {batch_size}\n"
@@ -144,6 +152,7 @@ def main(
f"\t- 16-bit floating-point training (fp16): {use_fp16}\n"
f"\t- seed: {seed}\n"
f"\t- only main rank logs: {log_on_main_rank_only}\n"
+ f"\t- resume from checkpoint: {resume_from_checkpoint}\n"
f"\t- model config file: {model_config_path}\n"
f"\t- huggingface tokenizer: {hf_tokenizer_name}\n"
f"\t- training data directory: {str(data_dir)}\n"
@@ -266,7 +275,7 @@ def main(
logger.info('Starting training...')
- trainer.train()
+ trainer.train(resume_from_checkpoint)
logger.info(f"Finished training! Saving model weights to '{str(save_dir)}'")
--
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